Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04771

[Submit comment/correction]

Locus	k04771
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 219
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd13f02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = A/T SNP structure (UNICODE) = ATGCCTGTACWTGGACACCAG Parent 1 SNP sequence = ATGCCTGTACATGGACACCAG Parent 2 SNP sequence = ATGCCTGTACTTGGACACCAG SNP = G/A SNP structure (UNICODE) = AAGCTCATATRAAGTTAATCA Parent 1 SNP sequence = AAGCTCATATGAAGTTAATCA Parent 2 SNP sequence = AAGCTCATATAAAGTTAATCA SNP = T/C SNP structure (UNICODE) = GGTCAAACCAYCAAAAAGATT Parent 1 SNP sequence = GGTCAAACCATCAAAAAGATT Parent 2 SNP sequence = GGTCAAACCACCAAAAAGATT SNP = A/G SNP structure (UNICODE) = TTACTCCTTCRCAGTGATGCA Parent 1 SNP sequence = TTACTCCTTCACAGTGATGCA Parent 2 SNP sequence = TTACTCCTTCGCAGTGATGCA SNP = C/T SNP structure (UNICODE) = TAACAAGTAAYGGTAAAAACT Parent 1 SNP sequence = TAACAAGTAACGGTAAAAACT Parent 2 SNP sequence = TAACAAGTAATGGTAAAAACT
Probe for Locus	basd13f02
Locus	k04771
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative N-myristoylated protein family member, with at least 2 transmembrane domains, a coiled coil-4 domain (3O816)
Type	PCR
PCR primers	Left 5' - TATCCGCCGTCTTCTGTTTT Right 5' - CGAGGGAGTACGGGTGTTTA
Sequence	AV927933
PCR size	353