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GrainGenes Marker Report: k04788

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Locus	k04788
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 114.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd14h21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 28 ] Restriction enzyme used for CAPS analysis = AfaI SNP = T/A SNP structure (UNICODE) = CAAGTCATTTWACTTACTGAC Parent 1 SNP sequence = CAAGTCATTTTACTTACTGAC Parent 2 SNP sequence = CAAGTCATTTAACTTACTGAC Recognized sequence for CAPs locus = GTAC SNP = A/G SNP structure (UNICODE) = GGGACGACAGRTGACATCTTA Parent 1 SNP sequence = GGGACGACAGATGACATCTTA Parent 2 SNP sequence = GGGACGACAGGTGACATCTTA SNP structure (UNICODE) = AATTTCACACRTGTCATGGGA Parent 1 SNP sequence = AATTTCACACATGTCATGGGA Parent 2 SNP sequence = AATTTCACACGTGTCATGGGA SNP = G/A SNP structure (UNICODE) = GGGACTCTATRTCTCCCATCA Parent 1 SNP sequence = GGGACTCTATGTCTCCCATCA Parent 2 SNP sequence = GGGACTCTATATCTCCCATCA SNP = T/G SNP structure (UNICODE) = CAGAGCATTCKGAAAGCATCT Parent 1 SNP sequence = CAGAGCATTCTGAAAGCATCT Parent 2 SNP sequence = CAGAGCATTCGGAAAGCATCT SNP structure (UNICODE) = CTAACAATCCRAAGCTAAAAG Parent 1 SNP sequence = CTAACAATCCAAAGCTAAAAG Parent 2 SNP sequence = CTAACAATCCGAAGCTAAAAG SNP = A/T SNP structure (UNICODE) = AGGCAATTTAWACACCACACG Parent 1 SNP sequence = AGGCAATTTAAACACCACACG Parent 2 SNP sequence = AGGCAATTTATACACCACACG
Probe for Locus	basd14h21
Locus	k04788
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = vesicle soluble NSF attachment protein receptor-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGTCCCTAAACTTCTCCCA Right 5' - GGCATCGCGTTGTATATCCT
Sequence	AV929507
PCR size	357