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GrainGenes Marker Report: k04799

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Locus	k04799
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 127.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd14e01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = CCTCGCCGTARGCCGCGATGT Parent 1 SNP sequence = CCTCGCCGTAGGCCGCGATGT Parent 2 SNP sequence = CCTCGCCGTAAGCCGCGATGT SNP = C/T SNP structure (UNICODE) = TGATGTCGGCYGTCTCGTGCT Parent 1 SNP sequence = TGATGTCGGCCGTCTCGTGCT Parent 2 SNP sequence = TGATGTCGGCTGTCTCGTGCT SNP = T/C SNP structure (UNICODE) = CACACGGCGAYCGGAGCTTCA Parent 1 SNP sequence = CACACGGCGATCGGAGCTTCA Parent 2 SNP sequence = CACACGGCGACCGGAGCTTCA
Probe for Locus	basd14e01
Locus	k04799
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = GLUTAMINE SYNTHETASE ROOT ISOZYME 3 (GLUTAMATE--AMMONIA LIGASE) (GS112)
Type	PCR
PCR primers	Left 5' - ACCCAACACCACAACTCACA Right 5' - CTTAACGTCAGCCTCGTGCT
PCR size	429