Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04827

[Submit comment/correction]

Locus	k04827
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 206
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd14n22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 32 ] SNP = T/C SNP structure (UNICODE) = ACGACTGAGAYCTTGTGTACC Parent 1 SNP sequence = ACGACTGAGATCTTGTGTACC Parent 2 SNP sequence = ACGACTGAGACCTTGTGTACC SNP = C/T SNP structure (UNICODE) = ATTTGCAGCAYACAGAGAGCA Parent 1 SNP sequence = ATTTGCAGCACACAGAGAGCA Parent 2 SNP sequence = ATTTGCAGCATACAGAGAGCA SNP = G/C SNP structure (UNICODE) = ACAGAGTTCASGGCCGATATC Parent 1 SNP sequence = ACAGAGTTCAGGGCCGATATC Parent 2 SNP sequence = ACAGAGTTCACGGCCGATATC SNP = G/T SNP structure (UNICODE) = TATTAGATGTKCGGTTTGATG Parent 1 SNP sequence = TATTAGATGTGCGGTTTGATG Parent 2 SNP sequence = TATTAGATGTTCGGTTTGATG SNP = T/A SNP structure (UNICODE) = CGCGGCAGAAWGGGCACGACT Parent 1 SNP sequence = CGCGGCAGAATGGGCACGACT Parent 2 SNP sequence = CGCGGCAGAAAGGGCACGACT SNP = T/G SNP structure (UNICODE) = TGTCGGGGACKATGAGGGGCA Parent 1 SNP sequence = TGTCGGGGACTATGAGGGGCA Parent 2 SNP sequence = TGTCGGGGACGATGAGGGGCA SNP = A/G SNP structure (UNICODE) = TAGTAGACCARCAGGAGGTTG Parent 1 SNP sequence = TAGTAGACCAACAGGAGGTTG Parent 2 SNP sequence = TAGTAGACCAGCAGGAGGTTG SNP = A/C SNP structure (UNICODE) = AAAGCCAGAGMAACAAATAAT Parent 1 SNP sequence = AAAGCCAGAGAAACAAATAAT Parent 2 SNP sequence = AAAGCCAGAGCAACAAATAAT
Probe for Locus	basd14n22
Locus	k04827
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCAGGTACCAAATGGGAGAA Right 5' - AAGAAGCAGAAGGCAAACGA
Sequence	AV929608
PCR size	461