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GrainGenes Marker Report: k04831

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Locus	k04831
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 22.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15h22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = C/G SNP structure (UNICODE) = AGAGAGCGCCSTCCACGATCT Parent 1 SNP sequence = AGAGAGCGCCCTCCACGATCT Parent 2 SNP sequence = AGAGAGCGCCGTCCACGATCT SNP = A/G SNP structure (UNICODE) = TCGCTCATCARCTTGTACATG Parent 1 SNP sequence = TCGCTCATCAACTTGTACATG Parent 2 SNP sequence = TCGCTCATCAGCTTGTACATG SNP = T/G SNP structure (UNICODE) = GCAGTCTAATKAATGAACATC Parent 1 SNP sequence = GCAGTCTAATTAATGAACATC Parent 2 SNP sequence = GCAGTCTAATGAATGAACATC SNP = G/A SNP structure (UNICODE) = CCGGATCGCCRCACCGGATGT Parent 1 SNP sequence = CCGGATCGCCGCACCGGATGT Parent 2 SNP sequence = CCGGATCGCCACACCGGATGT SNP = A/C SNP structure (UNICODE) = CATCCCAGCTMACGCTCTTGG Parent 1 SNP sequence = CATCCCAGCTAACGCTCTTGG Parent 2 SNP sequence = CATCCCAGCTCACGCTCTTGG
Probe for Locus	basd15h22
Locus	k04831
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative early nodulin 8 precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGAGTAGGGTTTACGCGAG Right 5' - GAAAGGAAGGAGTGCCATTG
Sequence	AV928738
PCR size	365