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GrainGenes Marker Report: k04833

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Locus	k04833
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 12.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15n13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = G/C SNP structure (UNICODE) = AGCTGCCCGGSGAAAAACCCA Parent 1 SNP sequence = AGCTGCCCGGGGAAAAACCCA Parent 2 SNP sequence = AGCTGCCCGGCGAAAAACCCA Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	basd15n13
Locus	k04833
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA99376.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - TGTCTTCCGTGGTTCCTTTC Right 5' - GCATTTTGTTCAGCTTCGGT
Sequence	AV928833
PCR size	377