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GrainGenes Marker Report: k04845

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Locus	k04845
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 123.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15o18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = AAACGCTTGTRGGCAACCGCC Parent 1 SNP sequence = AAACGCTTGTGGGCAACCGCC Parent 2 SNP sequence = AAACGCTTGTAGGCAACCGCC SNP = A/G SNP structure (UNICODE) = TAGCGGAGCCRCCGGAATCGT Parent 1 SNP sequence = TAGCGGAGCCACCGGAATCGT Parent 2 SNP sequence = TAGCGGAGCCGCCGGAATCGT
Probe for Locus	basd15o18
Locus	k04845
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0480C01.19 [Oryza sativa (japonica cultivar-group)] dbj BAB68059.1 P0480C01.19 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATACGCATCCCCACTTTCTG Right 5' - GGTGAGAGATGGGGCATTAC
Sequence	AV927483
PCR size	386