GrainGenes Marker Report: k04865
Locus
k04865
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 296.1
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd15d20
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = G/A SNP structure (UNICODE) = TCATGGAGTCRTACCTCATGA Parent 1 SNP sequence = TCATGGAGTCGTACCTCATGA Parent 2 SNP sequence = TCATGGAGTCATACCTCATGA Recognized sequence for CAPs locus = GTAC
Probe for Locus
basd15d20
Locus
k04865
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = calcium-binding EF hand family protein [Arabidopsis thaliana] gb AAF80620.1 F2D10.25 [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - CAGAACACCTTGCTGCTCAA
Right 5' - CATGATCGCACTTGAGGTGA
Sequence
AV918987
PCR size
417
GrainGenes Marker Report: k04865
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