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GrainGenes Marker Report: k04881

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Locus	k04881
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 93.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15p13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AseI SNP = T/C SNP structure (UNICODE) = CTATGTCTAAYTAATGTCTAA Parent 1 SNP sequence = CTATGTCTAATTAATGTCTAA Parent 2 SNP sequence = CTATGTCTAACTAATGTCTAA Recognized sequence for CAPs locus = ATTAAT
Probe for Locus	basd15p13
Locus	k04881
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir B84857 hypothetical protein At2g42700 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - AAATCAACTGCACGCAACAG Right 5' - AGAACATCACCGTCGGAAAC
Sequence	AV928864
PCR size	483