GrainGenes Marker Report: k04889
Locus
k04889
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 133.7
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd15e02
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = T/C SNP structure (UNICODE) = ATTTGGGTGTYGAAAGCTCAG Parent 1 SNP sequence = ATTTGGGTGTTGAAAGCTCAG Parent 2 SNP sequence = ATTTGGGTGTCGAAAGCTCAG Recognized sequence for CAPs locus = TCGA
Probe for Locus
basd15e02
Locus
k04889
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = Unknown protein [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AAAGTCTGGAGCGCAAAGAG
Right 5' - GAAGAAGCTGTGAAATCCGC
Sequence
AV928666
PCR size
495
GrainGenes Marker Report: k04889
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