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GrainGenes Marker Report: k04890

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Locus	k04890
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 25.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15h01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = GGTTGATGGCRACCCACAGCA Parent 1 SNP sequence = GGTTGATGGCGACCCACAGCA Parent 2 SNP sequence = GGTTGATGGCAACCCACAGCA SNP structure (UNICODE) = GGCCCTTGGCRAACGGGTACA Parent 1 SNP sequence = GGCCCTTGGCGAACGGGTACA Parent 2 SNP sequence = GGCCCTTGGCAAACGGGTACA SNP = T/C SNP structure (UNICODE) = AGTTCTGGGAYGGCGGGTTGA Parent 1 SNP sequence = AGTTCTGGGATGGCGGGTTGA Parent 2 SNP sequence = AGTTCTGGGACGGCGGGTTGA SNP = A/G SNP structure (UNICODE) = CGGCGAACTCRTCGTTTTCGT Parent 1 SNP sequence = CGGCGAACTCATCGTTTTCGT Parent 2 SNP sequence = CGGCGAACTCGTCGTTTTCGT
Probe for Locus	basd15h01
Locus	k04890
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10; putative protein. (AL035538) [Oryza sativa (japonica
Type	PCR
PCR primers	Left 5' - GCTATACTGGGGTCTGCCAA Right 5' - CTATGTGCGCAAGATGAGGA
Sequence	AV836878
PCR size	395