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GrainGenes Marker Report: k04910

Locus	k04910
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 278.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd17e11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = G/A SNP structure (UNICODE) = ATATGGTCTCRAAGAGTTCCT Parent 1 SNP sequence = ATATGGTCTCGAAGAGTTCCT Parent 2 SNP sequence = ATATGGTCTCAAAGAGTTCCT SNP = A/G SNP structure (UNICODE) = TGTATTAAGARGTGCATGCTA Parent 1 SNP sequence = TGTATTAAGAAGTGCATGCTA Parent 2 SNP sequence = TGTATTAAGAGGTGCATGCTA SNP = C/T SNP structure (UNICODE) = GGTACTCCTGYCCACTGTTTA Parent 1 SNP sequence = GGTACTCCTGCCCACTGTTTA Parent 2 SNP sequence = GGTACTCCTGTCCACTGTTTA SNP = G/C SNP structure (UNICODE) = ACTTCGGTCGSTGTCCTGCAA Parent 1 SNP sequence = ACTTCGGTCGGTGTCCTGCAA Parent 2 SNP sequence = ACTTCGGTCGCTGTCCTGCAA SNP = C/A SNP structure (UNICODE) = TGTCCTGCAAMCCCAAAGGAC Parent 1 SNP sequence = TGTCCTGCAACCCCAAAGGAC Parent 2 SNP sequence = TGTCCTGCAAACCCAAAGGAC
Probe for Locus	basd17e11
Locus	k04910
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Proteasome subunit beta type 3 (20S proteasome alpha subunit C) (20S proteasome subunit beta-3)
Type	PCR
PCR primers	Left 5' - AACAGTGTTCGTTCCGTTCC Right 5' - AGATCCGTGGTGTAGGGTTG
Sequence	BQ761937
PCR size	350