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GrainGenes Marker Report: k04917

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Locus	k04917
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 257.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd18o21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BcnI SNP = T/C SNP structure (UNICODE) = TGTCTCTCACYGGGAGCTCCC Parent 1 SNP sequence = TGTCTCTCACTGGGAGCTCCC Parent 2 SNP sequence = TGTCTCTCACCGGGAGCTCCC Recognized sequence for CAPs locus = CCSGG
Probe for Locus	basd18o21
Locus	k04917
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GATGCAACGAACGAGCACTA Right 5' - AAGACGAGGACACGGAGAGA
Sequence	AV931204
PCR size	427