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GrainGenes Marker Report: k04919

Locus	k04919
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 221
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd19g21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = ATCCTGTTGCRCCCGCCTTCT Parent 1 SNP sequence = ATCCTGTTGCACCCGCCTTCT Parent 2 SNP sequence = ATCCTGTTGCGCCCGCCTTCT Recognized sequence for CAPs locus = GCGC
Probe for Locus	basd19g21
Locus	k04919
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - AGCTGCATACAGTGGGGTTT Right 5' - TTGACATCAGGAAATGCAGG
PCR size	460