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GrainGenes Marker Report: k04936

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Locus	k04936
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 200.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd18d18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = AGTAAATGCARACTTCTGATA Parent 1 SNP sequence = AGTAAATGCAGACTTCTGATA Parent 2 SNP sequence = AGTAAATGCAAACTTCTGATA SNP = C/A SNP structure (UNICODE) = GCATTAAGCAMACCTCTCCCG Parent 1 SNP sequence = GCATTAAGCACACCTCTCCCG Parent 2 SNP sequence = GCATTAAGCAAACCTCTCCCG SNP = C/G SNP structure (UNICODE) = GGATTAGCAASCGAACACGAT Parent 1 SNP sequence = GGATTAGCAACCGAACACGAT Parent 2 SNP sequence = GGATTAGCAAGCGAACACGAT
Probe for Locus	basd18d18
Locus	k04936
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ornithine aminotransferase [Vitis vinifera]
Type	PCR
PCR primers	Left 5' - AGTCATTCTTGGGCCCTTTC Right 5' - TGCATCCAACTGACTCAGAGA
Sequence	AV931016
PCR size	394