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GrainGenes Marker Report: k04948

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Locus	k04948
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 128.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd18e06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = CCTCTTTATTYTCATCTCCTC Parent 1 SNP sequence = CCTCTTTATTCTCATCTCCTC Parent 2 SNP sequence = CCTCTTTATTTTCATCTCCTC SNP = A/G SNP structure (UNICODE) = TGGTGTTGACRGCGAGCTTGA Parent 1 SNP sequence = TGGTGTTGACAGCGAGCTTGA Parent 2 SNP sequence = TGGTGTTGACGGCGAGCTTGA SNP = T/G SNP structure (UNICODE) = AGTAGAGCCGKCGGAACTCAA Parent 1 SNP sequence = AGTAGAGCCGTCGGAACTCAA Parent 2 SNP sequence = AGTAGAGCCGGCGGAACTCAA
Probe for Locus	basd18e06
Locus	k04948
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = geranyl-geranyl reductase [Xerophyta humilis]
Type	PCR
PCR primers	Left 5' - GTTCGAGCCATCAAGGAAAG Right 5' - GCTTCGACTCCAATCCACAT
Sequence	AV931024
PCR size	427