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GrainGenes Marker Report: k04982

Locus	k04982
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 201.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd17l04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/A SNP structure (UNICODE) = CTCCATGGTGMGCCGACGGTG Parent 1 SNP sequence = CTCCATGGTGCGCCGACGGTG Parent 2 SNP sequence = CTCCATGGTGAGCCGACGGTG Recognized sequence for CAPs locus = GCGC
Probe for Locus	basd17l04
Locus	k04982
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0446B05.25 [Oryza sativa (japonica cultivar-group)] dbj BAB64271.1 P0005H10.8 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GACTGACCATGCAAGAAGCA Right 5' - GGCCAGAGACCTACAAGCAG
Sequence	AV930061
PCR size	469