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GrainGenes Marker Report: k04993

Locus	k04993
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 256.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd19n14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = T/C SNP structure (UNICODE) = TAAAGGATAGYTGCAGCTGCA Parent 1 SNP sequence = TAAAGGATAGTTGCAGCTGCA Parent 2 SNP sequence = TAAAGGATAGCTGCAGCTGCA SNP structure (UNICODE) = TACAAGCATAYCTTTTGTTTA Parent 1 SNP sequence = TACAAGCATATCTTTTGTTTA Parent 2 SNP sequence = TACAAGCATACCTTTTGTTTA SNP structure (UNICODE) = GACCCACAAAYTTGACAGACA Parent 1 SNP sequence = GACCCACAAATTTGACAGACA Parent 2 SNP sequence = GACCCACAAACTTGACAGACA SNP = C/G SNP structure (UNICODE) = TGTAGTGGTASCATCACAACT Parent 1 SNP sequence = TGTAGTGGTACCATCACAACT Parent 2 SNP sequence = TGTAGTGGTAGCATCACAACT SNP = A/G SNP structure (UNICODE) = ATGCTTCATCRCACGGTAATG Parent 1 SNP sequence = ATGCTTCATCACACGGTAATG Parent 2 SNP sequence = ATGCTTCATCGCACGGTAATG
Probe for Locus	basd19n14
Locus	k04993
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative peptide chain release factor subunit 1 (ERF1) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TATGTAAGCAGGCAGCATCG Right 5' - CAACGCCCTATATGCAAGGT
Sequence	AV837081
PCR size	376