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GrainGenes Marker Report: k05000

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Locus	k05000
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 162.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd20o09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/T SNP structure (UNICODE) = ATATAAGTTCWCTAATTTTGC Parent 1 SNP sequence = ATATAAGTTCACTAATTTTGC Parent 2 SNP sequence = ATATAAGTTCTCTAATTTTGC SNP = T/C SNP structure (UNICODE) = TCTAAACGATYATTACCACCA Parent 1 SNP sequence = TCTAAACGATTATTACCACCA Parent 2 SNP sequence = TCTAAACGATCATTACCACCA
Probe for Locus	basd20o09
Locus	k05000
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Conserved hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACCCAAAGACGAGAACGAGA Right 5' - TGAAGCACAAGGAGCACATC
Sequence	AV929078
PCR size	489