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GrainGenes Marker Report: k05008

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Locus	k05008
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 110.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1j22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/C SNP structure (UNICODE) = ATGCACACTGSATGAAGGATG Parent 1 SNP sequence = ATGCACACTGGATGAAGGATG Parent 2 SNP sequence = ATGCACACTGCATGAAGGATG SNP = G/A SNP structure (UNICODE) = AGGTAAATAGRGTGTGCGAGT Parent 1 SNP sequence = AGGTAAATAGGGTGTGCGAGT Parent 2 SNP sequence = AGGTAAATAGAGTGTGCGAGT SNP = T/G SNP structure (UNICODE) = TTGAAACCAGKGAGTGTGTTT Parent 1 SNP sequence = TTGAAACCAGTGAGTGTGTTT Parent 2 SNP sequence = TTGAAACCAGGGAGTGTGTTT SNP = A/G SNP structure (UNICODE) = AGCTAAGGGCRGTCTACTTCT Parent 1 SNP sequence = AGCTAAGGGCAGTCTACTTCT Parent 2 SNP sequence = AGCTAAGGGCGGTCTACTTCT
Probe for Locus	basd1j22
Locus	k05008
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein kinase [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - TATGTATGCACCATCGTCGG Right 5' - TTTCTGGGCTTGTTTGATCC
Sequence	AV927335
PCR size	482