Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k05013

[Submit comment/correction]

Locus	k05013
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 4.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd21f17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = AGGAGGAGGAYTGAAGAGGAG Parent 1 SNP sequence = AGGAGGAGGATTGAAGAGGAG Parent 2 SNP sequence = AGGAGGAGGACTGAAGAGGAG SNP = C/T SNP structure (UNICODE) = CCCTTTCCCTYTCCCTCTCCC Parent 1 SNP sequence = CCCTTTCCCTCTCCCTCTCCC Parent 2 SNP sequence = CCCTTTCCCTTTCCCTCTCCC SNP = A/G SNP structure (UNICODE) = AGAATCCGACRATGGATGCTG Parent 1 SNP sequence = AGAATCCGACAATGGATGCTG Parent 2 SNP sequence = AGAATCCGACGATGGATGCTG
Probe for Locus	basd21f17
Locus	k05013
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = F1N21.3 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CACCTCTCCCCTTGATTTGA Right 5' - GAAGCTGTGCAGCATCTACG
Sequence	AV836982
PCR size	411