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GrainGenes Marker Report: k05016

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Locus	k05016
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 10.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd22i04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = A/G SNP structure (UNICODE) = TCCTGTACTCRGGTTTCACCA Parent 1 SNP sequence = TCCTGTACTCAGGTTTCACCA Parent 2 SNP sequence = TCCTGTACTCGGGTTTCACCA Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	basd22i04
Locus	k05016
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GAAACTACGGGATGGCAAGA Right 5' - CAACAAATCACTCCATTGCG
Sequence	AV837005
PCR size	384