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GrainGenes Marker Report: k05030

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Locus	k05030
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 137
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1d10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = G/C SNP structure (UNICODE) = AGAGATTTCGSGACGTACCAG Parent 1 SNP sequence = AGAGATTTCGGGACGTACCAG Parent 2 SNP sequence = AGAGATTTCGCGACGTACCAG Recognized sequence for CAPs locus = CGCG
Probe for Locus	basd1d10
Locus	k05030
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = alpha-tubulin 5 [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CCAACACAGAGACAGGCTCA Right 5' - AATCCAGATTCCCAGCACAG
Sequence	AV927257
PCR size	374