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GrainGenes Marker Report: k05035

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Locus	k05035
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 145.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd20j22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = C/T SNP structure (UNICODE) = ACAGCAGGTAYTGTGATTAAG Parent 1 SNP sequence = ACAGCAGGTACTGTGATTAAG Parent 2 SNP sequence = ACAGCAGGTATTGTGATTAAG Recognized sequence for CAPs locus = GTAC
Probe for Locus	basd20j22
Locus	k05035
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GCCTCCCTGGACATAGTGAA Right 5' - GATCAATGGCTCTCTGGCTC
PCR size	465