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GrainGenes Marker Report: k05063

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Locus	k05063
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 164
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd22f14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/C SNP structure (UNICODE) = TTCATTCACASGCCAGCTTGG Parent 1 SNP sequence = TTCATTCACAGGCCAGCTTGG Parent 2 SNP sequence = TTCATTCACACGCCAGCTTGG Recognized sequence for CAPs locus = GGCC
Probe for Locus	basd22f14
Locus	k05063
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0039K24.2 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACGTATGCGTGTCCTCTCC Right 5' - GCGGATGAAGCTCAAGTAGC
Sequence	AV930389
PCR size	403