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GrainGenes Marker Report: k05065

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Locus	k05065
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 78.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1a17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = TCTGTTGTACYTTATGACAAT Parent 1 SNP sequence = TCTGTTGTACTTTATGACAAT Parent 2 SNP sequence = TCTGTTGTACCTTATGACAAT SNP = G/A SNP structure (UNICODE) = TCATGTCAATRCAAATCTTTA Parent 1 SNP sequence = TCATGTCAATGCAAATCTTTA Parent 2 SNP sequence = TCATGTCAATACAAATCTTTA SNP = T/G SNP structure (UNICODE) = TGGTTCTATTKTAGTTTTATT Parent 1 SNP sequence = TGGTTCTATTTTAGTTTTATT Parent 2 SNP sequence = TGGTTCTATTGTAGTTTTATT
Probe for Locus	basd1a17
Locus	k05065
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative seven transmembrane protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATATCATATCTCACCGCCGC Right 5' - AGTGCTGCATGCTCATTTTG
Sequence	AV927225
PCR size	474