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GrainGenes Marker Report: k05068

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Locus	k05068
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 110
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1l23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = A/G SNP structure (UNICODE) = TTCATTTACTRGATACTCCAT Parent 1 SNP sequence = TTCATTTACTAGATACTCCAT Parent 2 SNP sequence = TTCATTTACTGGATACTCCAT Recognized sequence for CAPs locus = CTAG
Probe for Locus	basd1l23
Locus	k05068
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0006H05.27 [Oryza sativa (japonica cultivar-group)] dbj BAB90449.1 OSJNBb0006H05.27 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGCTTTGCATCCACTTGAG Right 5' - TGAAAATGCTCGAACTGTGG
Sequence	AV836751
PCR size	405