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GrainGenes Marker Report: k05079

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Locus	k05079
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 137.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1j14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = CAGAATAAAAYGGAGGAACAT Parent 1 SNP sequence = CAGAATAAAACGGAGGAACAT Parent 2 SNP sequence = CAGAATAAAATGGAGGAACAT SNP = A/G SNP structure (UNICODE) = TTTGGCCATARAGCATGGCAC Parent 1 SNP sequence = TTTGGCCATAAAGCATGGCAC Parent 2 SNP sequence = TTTGGCCATAGAGCATGGCAC
Probe for Locus	basd1j14
Locus	k05079
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative electron transfer oxidoreductase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GACGGTGGCCAGATAACAGT Right 5' - AACAGCAGGAAGGAGCTGAA
Sequence	AV836747
PCR size	484