GrainGenes Marker Report: k05094
Locus
k05094
Type
CAPS
Chromosome
1H
Map
Hv-HNxH602-1H 80.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd23o02
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = G/A SNP structure (UNICODE) = GACCGGATCTRGACGCCAGGA Parent 1 SNP sequence = GACCGGATCTGGACGCCAGGA Parent 2 SNP sequence = GACCGGATCTAGACGCCAGGA Recognized sequence for CAPs locus = CTAG
Probe for Locus
basd23o02
Locus
k05094
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = OSJNBa0073L13.11 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AATGTACAAAAACCGCCTGC
Right 5' - TGACTGGGAGGAAACCTGTC
Sequence
AV931708
PCR size
402
GrainGenes Marker Report: k05094
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