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GrainGenes Marker Report: k05115

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Locus	k05115
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 172.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd23f10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = AAAGGAACTGYTACGGCGTCA Parent 1 SNP sequence = AAAGGAACTGCTACGGCGTCA Parent 2 SNP sequence = AAAGGAACTGTTACGGCGTCA SNP = T/G SNP structure (UNICODE) = TCCAGTATGGKCGGTACTTGG Parent 1 SNP sequence = TCCAGTATGGTCGGTACTTGG Parent 2 SNP sequence = TCCAGTATGGGCGGTACTTGG
Probe for Locus	basd23f10
Locus	k05115
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 68 kDa protein [Cicer arietinum]
Type	PCR
PCR primers	Left 5' - AACCACCGAGTGTATCCTGC Right 5' - CTGCAAGTCGTCCTCATCAA
Sequence	AV837092
PCR size	415