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GrainGenes Marker Report: k05123

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Locus	k05123
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 79.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd26d19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/C SNP structure (UNICODE) = AAGAATACTGSACCTCGAGAC Parent 1 SNP sequence = AAGAATACTGGACCTCGAGAC Parent 2 SNP sequence = AAGAATACTGCACCTCGAGAC Recognized sequence for CAPs locus = GGNCC
Probe for Locus	basd26d19
Locus	k05123
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGTCGAGCAATTTGTTCCTG Right 5' - TGGAAAGCTCCAAGCTGTTT
Sequence	AV837115
PCR size	385