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GrainGenes Marker Report: k05160

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Locus	k05160
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 95.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd26l01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = T/C SNP structure (UNICODE) = TGCCATAGGTYTATCGTTCCG Parent 1 SNP sequence = TGCCATAGGTTTATCGTTCCG Parent 2 SNP sequence = TGCCATAGGTCTATCGTTCCG SNP = T/A SNP structure (UNICODE) = TATCGTTCCGWTTACCTGTTT Parent 1 SNP sequence = TATCGTTCCGTTTACCTGTTT Parent 2 SNP sequence = TATCGTTCCGATTACCTGTTT SNP = G/T SNP structure (UNICODE) = CGTTCCAAGGKCGCGCTCTTG Parent 1 SNP sequence = CGTTCCAAGGGCGCGCTCTTG Parent 2 SNP sequence = CGTTCCAAGGTCGCGCTCTTG SNP structure (UNICODE) = TCGCCTGTAGYGACGAGGACG Parent 1 SNP sequence = TCGCCTGTAGTGACGAGGACG Parent 2 SNP sequence = TCGCCTGTAGCGACGAGGACG
Probe for Locus	basd26l01
Locus	k05160
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Xylose isomerase emb CAA64545.1 xylose isomerase [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - ATTTTCCAGTCGGGTGAACA Right 5' - CACCGGAACTACAAGGTCGT
Sequence	X95257
PCR size	405