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GrainGenes Marker Report: k05163

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Locus	k05163
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 108.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd23f16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = G/C SNP structure (UNICODE) = TTGCCGAGTCSGAGCAAAAGC Parent 1 SNP sequence = TTGCCGAGTCGGAGCAAAAGC Parent 2 SNP sequence = TTGCCGAGTCCGAGCAAAAGC SNP = C/T SNP structure (UNICODE) = TAATTTGCCGYGTTAGCTTGT Parent 1 SNP sequence = TAATTTGCCGCGTTAGCTTGT Parent 2 SNP sequence = TAATTTGCCGTGTTAGCTTGT SNP = A/T SNP structure (UNICODE) = TGGCCTCCATWTTGCCGCCAC Parent 1 SNP sequence = TGGCCTCCATATTGCCGCCAC Parent 2 SNP sequence = TGGCCTCCATTTTGCCGCCAC SNP structure (UNICODE) = AGCACCTTGGWGCTGCTGAAC Parent 1 SNP sequence = AGCACCTTGGAGCTGCTGAAC Parent 2 SNP sequence = AGCACCTTGGTGCTGCTGAAC SNP = T/A SNP structure (UNICODE) = CATTGCATGTWTAGCACAACC Parent 1 SNP sequence = CATTGCATGTTTAGCACAACC Parent 2 SNP sequence = CATTGCATGTATAGCACAACC SNP = G/A SNP structure (UNICODE) = TCGTATTCAGRATTCATTGCA Parent 1 SNP sequence = TCGTATTCAGGATTCATTGCA Parent 2 SNP sequence = TCGTATTCAGAATTCATTGCA
Probe for Locus	basd23f16
Locus	k05163
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Serine carboxypeptidase II-3 precursor (CP-MII.3) pir S44191 carboxypeptidase D (EC 3.4.16.6) II-3 precursor - barley
Type	PCR
PCR primers	Left 5' - TGTTCTCTGGTGGAGCACAC Right 5' - TATGTAAACCCCAGATCGGC
Sequence	AV931582
PCR size	372