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GrainGenes Marker Report: k05195

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Locus	k05195
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 167.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd2f22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = C/G SNP structure (UNICODE) = CATGCCTCCASGCCAATCTCC Parent 1 SNP sequence = CATGCCTCCACGCCAATCTCC Parent 2 SNP sequence = CATGCCTCCAGGCCAATCTCC Recognized sequence for CAPs locus = GGCC
Probe for Locus	basd2f22
Locus	k05195
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0023J03.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGACGTGGTGAGACTACGA Right 5' - TACCGTATGGGCTCTTCCTG
Sequence	AV836770
PCR size	390