Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k05217

[Submit comment/correction]

Locus	k05217
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 156.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd2a02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/G SNP structure (UNICODE) = CCTTGATGTCSACTCCGGTCG Parent 1 SNP sequence = CCTTGATGTCCACTCCGGTCG Parent 2 SNP sequence = CCTTGATGTCGACTCCGGTCG Recognized sequence for CAPs locus = GANTC
Probe for Locus	basd2a02
Locus	k05217
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATCGCAAGACAGGCAAAAAC Right 5' - ACCTGATCGACAGCCTTGTT
Sequence	AV927421
PCR size	411