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GrainGenes Marker Report: k05235

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Locus	k05235
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 146.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd27c09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = GAACTAGCCAYAGGTTGCACT Parent 1 SNP sequence = GAACTAGCCACAGGTTGCACT Parent 2 SNP sequence = GAACTAGCCATAGGTTGCACT SNP = T/G SNP structure (UNICODE) = TCAACACTTTKGTATAGAAGG Parent 1 SNP sequence = TCAACACTTTTGTATAGAAGG Parent 2 SNP sequence = TCAACACTTTGGTATAGAAGG SNP = G/T SNP structure (UNICODE) = TCTCCAGGTGKTTCTGCATGA Parent 1 SNP sequence = TCTCCAGGTGGTTCTGCATGA Parent 2 SNP sequence = TCTCCAGGTGTTTCTGCATGA
Probe for Locus	basd27c09
Locus	k05235
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = aspartate aminotransferase [Oryza sativa (japonica cultivar-group)] sp P37833 AATC_ORYSA Aspartate aminotransferase, cytoplasmic (Transamina
Type	PCR
PCR primers	Left 5' - CCAATCAATCAACATTCCCC Right 5' - GCAAGCAATGGTGCAAGATA
Sequence	AV921741
PCR size	355