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GrainGenes Marker Report: k05241

Locus	k05241
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 173.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd2a21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/T SNP structure (UNICODE) = ACCAAGCAACKCGCATCAACT Parent 1 SNP sequence = ACCAAGCAACGCGCATCAACT Parent 2 SNP sequence = ACCAAGCAACTCGCATCAACT Recognized sequence for CAPs locus = GCGC
Probe for Locus	basd2a21
Locus	k05241
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0020O11.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAGTGACTTTGCTGGAACA Right 5' - CTCGGTCCGTGGAAAGATAC
Sequence	AV836756
PCR size	484