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GrainGenes Marker Report: k05252

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Locus	k05252
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 214.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd27o16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = T/G SNP structure (UNICODE) = TCGCTCACCCKGCGGAACATC Parent 1 SNP sequence = TCGCTCACCCTGCGGAACATC Parent 2 SNP sequence = TCGCTCACCCGGCGGAACATC SNP = A/C SNP structure (UNICODE) = TCCATCTCGTMCATGCCCTCG Parent 1 SNP sequence = TCCATCTCGTACATGCCCTCG Parent 2 SNP sequence = TCCATCTCGTCCATGCCCTCG SNP = A/G SNP structure (UNICODE) = ACTCGGCGACRAGGTCGTTCA Parent 1 SNP sequence = ACTCGGCGACAAGGTCGTTCA Parent 2 SNP sequence = ACTCGGCGACGAGGTCGTTCA SNP structure (UNICODE) = GAGCGGAGCGMATCCGTTGCC Parent 1 SNP sequence = GAGCGGAGCGAATCCGTTGCC Parent 2 SNP sequence = GAGCGGAGCGCATCCGTTGCC SNP structure (UNICODE) = CATATAGCTGMACGGAGCGGA Parent 1 SNP sequence = CATATAGCTGAACGGAGCGGA Parent 2 SNP sequence = CATATAGCTGCACGGAGCGGA
Probe for Locus	basd27o16
Locus	k05252
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Tubulin beta-4 chain (Beta-4 tubulin) gb AAD10490.1 beta-tubulin 4 [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - GGGGAAAGCAGATGTTCTCA Right 5' - CTGGAGCAAACAATGGGAGT
Sequence	BJ551768
PCR size	435