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GrainGenes Marker Report: k05269

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Locus	k05269
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 254.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd26p18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = EcoRI SNP = A/C SNP structure (UNICODE) = CCTTTGAATTMTTTGTAATTT Parent 1 SNP sequence = CCTTTGAATTATTTGTAATTT Parent 2 SNP sequence = CCTTTGAATTCTTTGTAATTT Recognized sequence for CAPs locus = GAATTC
Probe for Locus	basd26p18
Locus	k05269
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0638D12.11 [Oryza sativa (japonica cultivar-group)] dbj BAB55503.1 P0638D12.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAAGCCTACCCAATCGCT Right 5' - GAGATACACGCATCGTCTGC
PCR size	382