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GrainGenes Marker Report: k05271

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Locus	k05271
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 353.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd27d09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/A SNP structure (UNICODE) = AGTTTTTAACWAAGTGCTTCC Parent 1 SNP sequence = AGTTTTTAACTAAGTGCTTCC Parent 2 SNP sequence = AGTTTTTAACAAAGTGCTTCC Recognized sequence for CAPs locus = CTNAG
Probe for Locus	basd27d09
Locus	k05271
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0032F06.20 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCATTGAGGACTGGTGATT Right 5' - CACAACAACCACTACGACGG
Sequence	AV943658
PCR size	395