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GrainGenes Marker Report: k05295

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Locus	k05295
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 70.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd3f22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Bsp1286I SNP = G/A SNP structure (UNICODE) = TAGTCCAAGGRCACATCACAC Parent 1 SNP sequence = TAGTCCAAGGGCACATCACAC Parent 2 SNP sequence = TAGTCCAAGGACACATCACAC Recognized sequence for CAPs locus = GDGCHC
Probe for Locus	basd3f22
Locus	k05295
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = similar to olfactory receptor MOR104-3 [Rattus norvegicus]
Type	PCR
PCR primers	Left 5' - CCTGCATTGATGAGCAGAAA Right 5' - ACAACCAGCCCATCATCATC
Sequence	AV836797
PCR size	351