Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k05374

[Submit comment/correction]

Locus	k05374
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 146.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basdk03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/C SNP structure (UNICODE) = TTCCTAGGACSTTCTTCAAAT Parent 1 SNP sequence = TTCCTAGGACGTTCTTCAAAT Parent 2 SNP sequence = TTCCTAGGACCTTCTTCAAAT Recognized sequence for CAPs locus = GGNCC
Probe for Locus	basdk03
Locus	k05374
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - AGCCTTCCTTCACCAACAAA Right 5' - ATCAAGGAGAAAACTCGCCA
PCR size	396