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GrainGenes Marker Report: k06020

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Locus	k06020
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 73.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK2J22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/C SNP structure (UNICODE) = CGATGGAAACMAGCTCGCCAT Parent 1 SNP sequence = CGATGGAAACAAGCTCGCCAT Parent 2 SNP sequence = CGATGGAAACCAGCTCGCCAT SNP = G/A SNP structure (UNICODE) = AGAACAAGGARGCTGAGCGCT Parent 1 SNP sequence = AGAACAAGGAGGCTGAGCGCT Parent 2 SNP sequence = AGAACAAGGAAGCTGAGCGCT
Probe for Locus	BaAK2J22
Locus	k06020
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = macrophage migration inhibitory factor family protein / MIF family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGATAAAGCAAAACCCCTGC Right 5' - AGCAAAGCTAGTGCAGGCTC
Sequence	AV832605
PCR size	172