GrainGenes Marker Report: k06062
Locus
k06062
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 39.3
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAK30H06
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/C SNP structure (UNICODE) = CTAAACTCGTSGTCCGTCAAC Parent 1 SNP sequence = CTAAACTCGTGGTCCGTCAAC Parent 2 SNP sequence = CTAAACTCGTCGTCCGTCAAC Recognized sequence for CAPs locus = GGNCC
Probe for Locus
BaAK30H06
Locus
k06062
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative sulfolipid synthase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - CTGTTGGCTGGCTCAAATCT
Right 5' - ACCCTTGGATTGCCACCT
Sequence
BJ458049
PCR size
156
GrainGenes Marker Report: k06062
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