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GrainGenes Marker Report: k06069

Locus	k06069
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 169.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK42B16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = AATGCTTTSGRAATCAGTNNW Parent 1 SNP sequence = AATGCTTTCGAAATCAGTNNT Parent 2 SNP sequence = AATGCTTTGGGAATCAGTTTA Recognized sequence for CAPs locus = TCGA SNP = G/A SNP structure (UNICODE) = GGAAATCTCGRTTTTGAATAC Parent 1 SNP sequence = GGAAATCTCGGTTTTGAATAC Parent 2 SNP sequence = GGAAATCTCGATTTTGAATAC
Probe for Locus	BaAK42B16
Locus	k06069
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative copper chaperone [Oryza sativa (japonica cultivar-group)] dbj BAD11546.1 putative copper chaperone [Oryza sativa (japonica cultiva
Type	PCR
PCR primers	Left 5' - GGTGAAAACTGGCACTTGGT Right 5' - GCTAGTTCAGGCATTTCCCA
Sequence	BJ460757
PCR size	180