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GrainGenes Marker Report: k06153

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Locus	k06153
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 31.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK26L07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanI SNP = G/A SNP structure (UNICODE) = ACCTTCTACARGTGCCAAGGC Parent 1 SNP sequence = ACCTTCTACAGGTGCCAAGGC Parent 2 SNP sequence = ACCTTCTACAAGTGCCAAGGC Recognized sequence for CAPs locus = GGYRCC
Probe for Locus	BaAK26L07
Locus	k06153
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = O-methyltransferase ZRP4 (OMT) pir JQ2268 O-methyltransferase (EC 2.1.1.-) - maize
Type	PCR
PCR primers	Left 5' - CTGAAGCCCTACCCAGGTTT Right 5' - CTGCGAACTTGGAAGAGGAG
Sequence	BJ457207
PCR size	351