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GrainGenes Marker Report: k06163

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Locus	k06163
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 168.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK44D07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/T SNP structure (UNICODE) = CCTCCTCTGGKCCGTCGACGT Parent 1 SNP sequence = CCTCCTCTGGGCCGTCGACGT Parent 2 SNP sequence = CCTCCTCTGGTCCGTCGACGT Recognized sequence for CAPs locus = GGCC
Probe for Locus	BaAK44D07
Locus	k06163
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = eukaryotic translation initiation factor 1A [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACCGAGTTCTTCAGCACAA Right 5' - GGGGAGAACACTTCGATTCA
Sequence	AJ460674
PCR size	350