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GrainGenes Marker Report: k06178

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Locus	k06178
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 232.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK15H22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = ATTTTGATTCRCACCTGCACT Parent 1 SNP sequence = ATTTTGATTCGCACCTGCACT Parent 2 SNP sequence = ATTTTGATTCACACCTGCACT SNP = T/C SNP structure (UNICODE) = CAGAGTATACYAGACGTAGTA Parent 1 SNP sequence = CAGAGTATACTAGACGTAGTA Parent 2 SNP sequence = CAGAGTATACCAGACGTAGTA SNP = C/A SNP structure (UNICODE) = TATTGTCGACMCTCACACAGC Parent 1 SNP sequence = TATTGTCGACCCTCACACAGC Parent 2 SNP sequence = TATTGTCGACACTCACACAGC
Probe for Locus	BaAK15H22
Locus	k06178
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein AT4g02790 [imported] - Arabidopsis thaliana gb AAD15335.1 hypothetical protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGTGGAACCGAATGAACAGA Right 5' - CGATGTTCTGGGGAATGAAG
Sequence	AV929895
PCR size	352