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GrainGenes Marker Report: k06202

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Locus	k06202
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 146.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK39I18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MflI SNP = A/G SNP structure (UNICODE) = CGGCAACGGGRTCTTCAGGCC Parent 1 SNP sequence = CGGCAACGGGATCTTCAGGCC Parent 2 SNP sequence = CGGCAACGGGGTCTTCAGGCC Recognized sequence for CAPs locus = RGATCY
Probe for Locus	BaAK39I18
Locus	k06202
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ribosomal protein [Oryza sativa (japonica cultivar-group)] gb AAM93681.1 putative ribosomal protein [Oryza sativa (japonica cultiv
Type	PCR
PCR primers	Left 5' - CGTCGCAGGACTGTACTGAA Right 5' - AGGAAGCGACATGGAAGATG
Sequence	BJ460118
PCR size	257