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GrainGenes Marker Report: k06210

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Locus	k06210
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 166.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK27E01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = T/G SNP structure (UNICODE) = ATACCATGTCKATTTGGAAGC Parent 1 SNP sequence = ATACCATGTCTATTTGGAAGC Parent 2 SNP sequence = ATACCATGTCGATTTGGAAGC Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaAK27E01
Locus	k06210
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative glutathione S-transferase OsGSTZ1 [Oryza sativa subsp. japonica]
Type	PCR
PCR primers	Left 5' - GCTTGAAGTAACCTCGGCAC Right 5' - TGGGAAGGGATTTCAGTCAG
Sequence	BJ457337
PCR size	253